PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c16_1200V3.3.p
Common NamePHYPADRAFT_167396
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HRT-like
Protein Properties Length: 583aa    MW: 63979.4 Da    PI: 10.181
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c16_1200V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like382.7e-12371397228
           HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                        CG++le G +C++ Pvkg+KRC+ HK 
  Pp3c16_1200V3.3.p 371 CGILLESGLPCSALPVKGGKRCRIHKK 397
                        **************************5 PP

2HRT-like48.71.3e-15532561130
           HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                        iCG++l dG+vC ++P ++RKRCe+HKG R
  Pp3c16_1200V3.3.p 532 ICGLKLLDGTVCPDPPRPDRKRCEAHKGLR 561
                        8***************************99 PP

Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MPFPGGDGGH GMNPMTDFKP VNAQGKKQRM KREDHAHVKH DSSFSDWKVL VGPSDWKDHA  60
CGKAQDRFRV KNLPTSYSGS GLYELGVTPP AWLPPQRNNY PGILKPQDVV VVYLGCAESV  120
NYHLQRYGQT GAHLEGVRST RLFSAKNETA SKPGLPQLEK TRSFASECRN LSIDLAPGAD  180
GDVSTGSNGS IDNTDDLQAT SEKKRANTSD HIGNRSPVRG PCLFSEVFAL GCSIAFRWAA  240
TDSKAAADKA EFELTEVFDY AWKRGGNFRQ RSADILAKIV KGGALGSNDL PYGCFGYNSR  300
CICFFFKRSR VGVKIAARKL PDDNHRFVRS RRSNPSGGSD FFSFRYSPPL LPGKTAKSAA  360
FTKLDIPIDR CGILLESGLP CSALPVKGGK RCRIHKKISH KKPARVAHTS SPTYDSNGAL  420
PRDTNVSKNS GKTPTKPPPE HSTSCFPYRP QVQPVPGAPA EPKRRGSLSF NSWLRTSELR  480
MAKSREWAEL KTPLSPRPEG TRRSSTSYSS ILATCEESMY ESPCRSPSRR EICGLKLLDG  540
TVCPDPPRPD RKRCEAHKGL RNQMLPQSPV YSSTASLRQG FV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001771950.10.0predicted protein
TrEMBLA9T0370.0A9T037_PHYPA; Predicted protein
STRINGPP1S144_109V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-20effector of transcription2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]